PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03435.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 249aa    MW: 28434.7 Da    PI: 8.8413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03435.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.51.4e-112311134128
                      NAM  34 ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                              ++ vd+y   +P++L  k+++++++ + F++ +kk+++  + nr  +   g Wk   + k+v++kk+ ++glkkt+ f   ++   
  Sme2.5_03435.1_g00004.1  23 FRLVDLYGNkKPSQLF-KTNTTTTHHHVFTHLKKKKNK--NFNRgiVGGGGSWKGIDSGKPVYDKKRLVIGLKKTFRFD--EK--- 100
                              45678775438****5.666777888999998888765..566642667999*************99***********7..33... PP

                      NAM 117 ektdWvmheyrl 128
                               +  W+m+eyrl
  Sme2.5_03435.1_g00004.1 101 -NEVWIMKEYRL 111
                              .347******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.1251139IPR003441NAC domain
SuperFamilySSF1019413.01E-158138IPR003441NAC domain
PfamPF023652.8E-634111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFDDEEFMI CLLKFVAGMS VQFRLVDLYG NKKPSQLFKT NTTTTHHHVF THLKKKKNKN  60
FNRGIVGGGG SWKGIDSGKP VYDKKRLVIG LKKTFRFDEK NEVWIMKEYR LSDNILKALR  120
LRGQIQHEEE FVVCRITKSV NVENSSSQCQ ETVKSYDQEN QDLGQSSTAA NVILNVNMIS  180
PVSLVLKESN VASAKKKKNA LIIMTLLVTT NNLIQTMVPY IPEPPQEDEA DSIPLFCEDF  240
YIGYTNLWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-94PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1DFW01e-96M1DFW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000883963e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041